Proteomics

• plasma proteome
  12 June 2012

  References
  Mining the plasma proteome for cancer biomarkers. Samir M. Hanash, Sharon J. Pitteri & Vitor M. Faca. Nature 452, 571-579 (3 April 2008)

• fluid proteome profiling
  25 February 2012

  Types
  blood proteome profiling serum proteome profiling
  fluid proteome profiling urine proteome profiling (urinary proteomics) cerebrospinal fluid proteome profiling proximal fluid proteome profiling saliva proteome profiling gastric fluid proteome profiling synovial fluid proteome profiling amniotic fluid proteome profiling

• O-glycoproteome
  25 November 2011

  References
  Mining the O-glycoproteome using zinc-finger nuclease-glycoengineered SimpleCell lines. Steentoft C, Vakhrushev SY, Vester-Christensen MB, Schjoldager KT, Kong Y, Bennett EP, Mandel U, Wandall H, Levery SB, Clausen H. Nat Methods. 2011 Oct 9;8(11):977-82. PMID: #21983924#

• proteome
  25 November 2011

  Subtypes
  glycoproteome O-glycoproteome
  Localization
  tissular proteome blood proteome
  cellular proteome
  subcellualr proteome cilia proteome
  Links
  http://www.mapuproteome.com/

• differential proteomics
  17 April 2011

  References
  Differential proteomics incorporating iTRAQ labeling and multi-dimensional separations. Collins BC, Lau TY, Pennington SR, Gallagher WM. Methods Mol Biol. 2011;691:369-83. PMID: #20972766#

• mass spectrometry-based proteomics
  9 March 2010

  See also
  mass spectrometry
  proteomics
  References
  Applying mass spectrometry-based proteomics to genetics, genomics and network biology. Gstaiger M, Aebersold R. Nat Rev Genet. 2009 Sep;10(9):617-27. PMID: #19687803#

• SELDI-MS
  23 December 2009

  SELDI-TOF mass spectrometry

• microproteomics
  23 December 2009

  References
  Microproteomics: analysis of protein diversity in small samples. Gutstein HB, Morris JS, Annangudi SP, Sweedler JV. Mass Spectrom Rev. 2008 Jul-Aug;27(4):316-30. PMID: #18271009#

• proteomics from FFPE
  23 December 2009

  Open References
  Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma. Wiśniewski JR, Ostasiewicz P, Duś K, Zielińska DF, Gnad F, Mann M. Mol Syst Biol. 2012;8:611. doi: 10.1038/msb.2012.44. PMID: #22968445# [Free]
  Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues. Magdeldin S, Yamamoto T. Proteomics. 2012 Apr;12(7):1045-58. doi: 10.1002/pmic.201100550. PMID: #22318899# [Free]
  Proteomic analysis of formalin-fixed (...)

• proteomics in breast cancer
  23 December 2009

  References
  Reproducibility of mass spectrometry based protein profiles for diagnosis of breast cancer across clinical studies: a systematic review. Callesen AK, Vach W, Jørgensen PE, Cold S, Mogensen O, Kruse TA, Jensen ON, Madsen JS. J Proteome Res. 2008 Apr;7(4):1395-402. PMID: #18303834#

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