Home > G. Tumoral pathology > Molecular pathology of tumors > Genetic anomalies > LOH by regions > tumoral allelotyping

tumoral allelotyping

Tuesday 2 March 2004


- microsatellite allelotyping
- SNPs allelotyping


Ch. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 X Y


- Nishimura T, Nishida N, Komeda T, Fukuda Y, Nakao K. Genotype stability and clonal evolution of hepatocellular carcinoma assessed by autopsy-based genome-wide microsatellite analysis. Cancer Genet Cytogenet. 2005 Sep;161(2):164-9. PMID: 16102588

- Iacobuzio-Donahue CA, van der Heijden MS, Baumgartner MR, Troup WJ, Romm JM, Doheny K, Pugh E, Yeo CJ, Goggins MG, Hruban RH, Kern SE. Large-scale allelotype of pancreaticobiliary carcinoma provides quantitative estimates of genome-wide allelic loss. Cancer Res. 2004 Feb 1;64(3):871-5. PMID: 14871814

- Harkes IC, Elstrodt F, Dinjens WN, Molier M, Klijn JG, Berns EM, Schutte M. Allelotype of 28 human breast cancer cell lines and xenografts. Br J Cancer. 2003 Dec 15;89(12):2289-92. PMID: 14676808

- Takeuchi S, Seriu T, van Dongen JJ, Szczepanski T, Tsukasaki K, Takeuchi N, Fermin AC, Seo H, Bartram CR, Koeffler HP. Allelotype analysis in relapsed childhood acute lymphoblastic leukemia. Oncogene. 2003 Oct 9;22(44):6970-6. PMID: 14534546

- Miller BJ, Wang D, Krahe R, Wright FA. Pooled analysis of loss of heterozygosity in breast cancer: a genome scan provides comparative evidence for multiple tumor suppressors and identifies novel candidate regions. Am J Hum Genet. 2003 Oct;73(4):748-67. Epub 2003 Sep 16. PMID: 13680524

- Tzai TS, Chen HH, Chan SH, Ho CL, Tsai YS, Cheng HL, Dai YC, Lin JS, Yang WH, Chow NH. Clinical significance of allelotype profiling for urothelial carcinoma. Urology. 2003 Aug;62(2):378-84. PMID: 12893368

- Hu J, Jiang C, Ng HK, Pang JC, Tong CY, Chen S. Genome-wide allelotype study of primary glioblastoma multiforme. Chin Med J (Engl). 2003 Apr;116(4):577-83. PMID: 12875726

- Ascano JJ, Powell SM. Determination of cancer allelotype. Methods Mol Biol. 2003;222:295-307. No abstract available. PMID: 12710694

- Beder LB, Gunduz M, Ouchida M, Fukushima K, Gunduz E, Ito S, Sakai A, Nagai N, Nishizaki K, Shimizu K. Genome-wide analyses on loss of heterozygosity in head and neck squamous cell carcinomas. Lab Invest. 2003 Jan;83(1):99-105. PMID: 12533690

- Nishimura T, Nishida N, Itoh T, Kuno M, Minata M, Komeda T, Fukuda Y, Ikai I, Yamaoka Y, Nakao K. Comprehensive allelotyping of well-differentiated human hepatocellular carcinoma with semiquantitative determination of chromosomal gain or loss. Genes Chromosomes Cancer. 2002 Dec;35(4):329-39. PMID: 12378527

- Novak U, Oppliger Leibundgut E, Hager J, Muhlematter D, Jotterand M, Besse C, Leupin N, Ratschiller D, Papp J, Kearsey G, Aebi S, Graber H, Jaggi R, Luthi JM, Meyer-Monard S, Lathrop M, Tobler A, Fey MF. A high-resolution allelotype of B-cell chronic lymphocytic leukemia (B-CLL). Blood. 2002 Sep 1;100(5):1787-94. PMID: 12176901

- Okada S, Tsuda H, Takarabe T, Yoshikawa H, Taketani Y, Hirohashi S. Allelotype analysis of common epithelial ovarian cancers with special reference to comparison between clear cell adenocarcinoma with other histological types. Jpn J Cancer Res. 2002 Jul;93(7):798-806. PMID: 12149146

- Hu J, Pang JC, Tong CY, Lau B, Yin XL, Poon WS, Jiang CC, Zhou LF, Ng HK. High-resolution genome-wide allelotype analysis identifies loss of chromosome 14q as a recurrent genetic alteration in astrocytic tumours. Br J Cancer. 2002 Jul 15;87(2):218-24. PMID: 12107846

- Levy L, Renard CA, Wei Y, Buendia MA. Genetic alterations and oncogenic pathways in hepatocellular carcinoma. Ann N Y Acad Sci. 2002 Jun;963:21-36. PMID: 12095925

- Gotte K, Riedel F, Schafer C, Coy JF, Hormann K. Genetic discordance between primary tumours and metastases of head and neck cancer detected by microsatellite analysis. Oncol Rep. 2002 Jul-Aug;9(4):829-34. PMID: 12066217

- Chang J, Kim NG, Piao Z, Park C, Park KS, Paik YK, Lee WJ, Kim BR, Kim H. Assessment of chromosomal losses and gains in hepatocellular carcinoma. Cancer Lett. 2002 Aug 28;182(2):193-202. PMID: 12048165

- Mora J, Cheung NK, Oplanich S, Chen L, Gerald WL. Novel regions of allelic imbalance identified by genome-wide analysis of neuroblastoma. Cancer Res. 2002 Mar 15;62(6):1761-7. PMID: 11912152

- Yin XL, Pang JC, Ng HK. Identification of a region of homozygous deletion on 8p22-23.1 in medulloblastoma. Oncogene. 2002 Feb 21;21(9):1461-8. PMID: 11857089

- Nakayama K, Takebayashi Y, Namiki T, Tamahashi N, Nakayama S, Uchida T, Miyazaki K, Fukumoto M. Comprehensive allelotype study of ovarian tumors of low malignant potential: potential differences in pathways between tumors with and without genetic predisposition to invasive carcinoma. Int J Cancer. 2001 Nov15;94(4):605-9. PMID: 11745452

- Shao JY, Huang XM, Yu XJ, Huang LX, Wu QL, Xia JC, Wang HY, Feng QS, Ren ZF, Ernberg I, Hu LF, Zeng YX. Loss of heterozygosity and its correlation with clinical outcome and Epstein-Barr virus infection in nasopharyngeal carcinoma. Anticancer Res. 2001 Jul-Aug;21(4B):3021-9. PMID: 11712805

- Zheng YL, Herr AM, Jacobson BA, Ferrin LJ. High-density allelotype of the commonly studied gastric cancer cell lines. Genes Chromosomes Cancer. 2001 Sep;32(1):67-81. PMID: 11477663

- Mora J, Cheung NK, Gerald WL. Genetic heterogeneity and clonal evolution in neuroblastoma. Br J Cancer. 2001 Jul 20;85(2):182-9. PMID: 11461074

- Tong CY, Zheng PP, Pang JC, Poon WS, Chang AR, Ng HK. Identification of novel regions of allelic loss in ependymomas by high-resolution allelotyping with 384 microsatellite markers. J Neurosurg. 2001 Jul;95(1):9-14. PMID: 11453403

- Cass I, Baldwin RL, Fasylova E, Fields AL, Klinger HP, Runowicz CD, Karlan BY. Allelotype of papillary serous peritoneal carcinomas. Gynecol Oncol. 2001 Jul;82(1):69-76. PMID: 11426964

- Kim HS, Woo DK, Bae SI, Kim YI, Kim WH. Allelotype of the adenoma-carcinoma sequence of the stomach. Cancer Detect Prev. 2001;25(3):237-44. PMID: 11425265

- Laurent-Puig P, Legoix P, Bluteau O, Belghiti J, Franco D, Binot F, Monges G, Thomas G, Bioulac-Sage P, Zucman-Rossi J. Genetic alterations associated with hepatocellular carcinomas define distinct pathways of hepatocarcinogenesis. Gastroenterology. 2001 Jun;120(7):1763-73. PMID: 11375957

- Nakayama K, Konno M, Kanzaki A, Morikawa T, Miyashita H, Fujioka T, Uchida T, Miyazaki K, Takao S, Aikou T, Fukumoto M, Takebayashi Y. Allelotype analysis of gallbladder carcinoma associated with anomalous junction of pancreaticobiliary duct. Cancer Lett. 2001 May 26;166(2):135-41. PMID: 11311485

- Rigaud G, Missiaglia E, Moore PS, Zamboni G, Falconi M, Talamini G, Pesci A, Baron A, Lissandrini D, Rindi G, Grigolato P, Pederzoli P, Scarpa A. High resolution allelotype of nonfunctional pancreatic endocrine tumors: identification of two molecular subgroups with clinical implications. Cancer Res. 2001 Jan 1;61(1):285-92. PMID: 11196176

- Shao JY, Wang HY, Huang XM, Feng QS, Huang P, Feng BJ, Huang LX, Yu XJ, Li JT, Hu LF, Ernberg I, Zeng YX. Genome-wide allelotype analysis of sporadic primary nasopharyngeal carcinoma from southern China. Int J Oncol. 2000 Dec;17(6):1267-75. PMID: 11078815

- Rigaud G, Moore PS, Zamboni G, Orlandini S, Taruscio D, Paradisi S, Lemoine NR, Kloppel G, Scarpa A. Allelotype of pancreatic acinar cell carcinoma. Int J Cancer. 2000 Dec 1;88(5):772-7. PMID: 11072247

- Clayton RN, Pfeifer M, Atkinson AB, Belchetz P, Wass JA, Kyrodimou E, Vanderpump M, Simpson D, Bicknell J, Farrell WE. Different patterns of allelic loss (loss of heterozygosity) in recurrent human pituitary tumors provide evidence for multiclonal origins. Clin Cancer Res. 2000 Oct;6(10):3973-82. PMID: 11051246

- Roncalli M, Borzio M, Bianchi P, Laghi L. Comprehensive allelotype study of hepatocellular carcinoma. Hepatology. 2000 Oct;32(4 Pt 1):876. PMID: 11041689

- Yatsuoka T, Sunamura M, Furukawa T, Fukushige S, Yokoyama T, Inoue H, Shibuya K, Takeda K, Matsuno S, Horii A. Association of poor prognosis with loss of 12q, 17p, and 18q, and concordant loss of 6q/17p and 12q/18q in human pancreatic ductal adenocarcinoma. Am J Gastroenterol. 2000 Aug;95(8):2080-5. PMID: 10950061

- Buendia MA. Genetics of hepatocellular carcinoma. Semin Cancer Biol. 2000 Jun;10(3):185-200. PMID: 10936068

- Bartlett JM, Crilly A, White A, Madhok R. Modification of the GeneScan 2500 fluorescent dye standard for accurate product sizing. Mol Biotechnol. 1999 Dec 15;13(3):185-9. PMID: 10934531

- Lo KW, Teo PM, Hui AB, To KF, Tsang YS, Chan SY, Mak KF, Lee JC, Huang DP. High resolution allelotype of microdissected primary nasopharyngeal carcinoma. Cancer Res. 2000 Jul 1;60(13):3348-53. PMID: 10910036

- Kang YK, Kim YI, Kim WH. Allelotype analysis of intrahepatic cholangiocarcinoma. Mod Pathol. 2000 Jun;13(6):627-31. PMID: 10874666

- von Deimling A, Fimmers R, Schmidt MC, Bender B, Fassbender F, Nagel J, Jahnke R, Kaskel P, Duerr EM, Koopmann J, Maintz D, Steinbeck S, Wick W, Platten M, Muller DJ, Przkora R, Waha A, Blumcke B, Wellenreuther R, Meyer-Puttlitz B, Schmidt O, Mollenhauer J, Poustka A, Stangl AP, Lenartz D, von Ammon K. Comprehensive allelotype and genetic anaysis of 466 human nervous system tumors. J Neuropathol Exp Neurol. 2000 Jun;59(6):544-58. PMID: 10850867

- Mori N, Morosetti R, Hoflehner E, Lubbert M, Mizoguchi H, Koeffler HP. Allelic loss in the progression of myelodysplastic syndrome. Cancer Res. 2000 Jun 1;60(11):3039-42. PMID: 10850454

- Bonsing BA, Corver WE, Fleuren GJ, Cleton-Jansen AM, Devilee P, Cornelisse CJ. Allelotype analysis of flow-sorted breast cancer cells demonstrates genetically related diploid and aneuploid subpopulations in primary tumors and lymph node metastases. Genes Chromosomes Cancer. 2000 Jun;28(2):173-83. PMID: 10825002

- Xie D, Hofmann WK, Mori N, Miller CW, Hoelzer D, Koeffler HP. Allelotype analysis of the myelodysplastic syndrome. Leukemia. 2000 May;14(5):805-10. PMID: 10803510

- Okabe H, Ikai I, Matsuo K, Satoh S, Momoi H, Kamikawa T, Katsura N, Nishitai R, Takeyama O, Fukumoto M, Yamaoka Y. Comprehensive allelotype study of hepatocellular carcinoma: potential differences in pathways to hepatocellular carcinoma between hepatitis B virus-positive and -negative tumors. Hepatology. 2000 May;31(5):1073-9. PMID: 10796882

- Stanton SE, Shin SW, Johnson BE, Meyerson M. Recurrent allelic deletions of chromosome arms 15q and 16q in human small cell lung carcinomas. Genes Chromosomes Cancer. 2000 Mar;27(3):323-31. PMID: 10679923

- Euhus DM, Maitra A, Wistuba II, Ashfaq R, Alberts A, Gibbons D, Gazdar AF. Use of archival fine-needle aspirates for the allelotyping of tumors.
Cancer. 1999 Dec 25;87(6):372-9. PMID: 10603191

- Mao X, Barfoot R, Hamoudi RA, Easton DF, Flanagan AM, Stratton MR. Allelotype of uterine leiomyomas. Cancer Genet Cytogenet. 1999 Oct 15;114(2):89-95. PMID: 10549262

- Parrella P, Sidransky D, Merbs SL. Allelotype of posterior uveal melanoma: implications for a bifurcated tumor progression pathway. Cancer Res. 1999 Jul 1;59(13):3032-7. PMID: 10397238

- Nagai H, Kinoshita T, Suzuki H, Hatano S, Murate T, Saito H. Identification and mapping of novel tumor suppressor loci on 6p in diffuse large B-cell non-Hodgkin’s lymphoma. Genes Chromosomes Cancer. 1999 Jul;25(3):277-83. PMID: 10379874

- Yustein AS, Harper JC, Petroni GR, Cummings OW, Moskaluk CA, Powell SM. Allelotype of gastric adenocarcinoma. Cancer Res. 1999 Apr 1;59(7):1437-41. PMID: 10197609

- Shaw ME, Elder PA, Abbas A, Knowles MA. Partial allelotype of schistosomiasis-associated bladder cancer. Int J Cancer. 1999 Mar 1;80(5):656-61. PMID: 10048962

- Zachos G, Koumantaki E, Vareltzidis A, Spandidos DA. Evidence for loss of heterozygosity in human psoriatic lesions. Br J Dermatol. 1998 Dec;139(6):974-7. PMID: 9990358

- Dolan K, Garde J, Gosney J, Sissons M, Wright T, Kingsnorth AN, Walker SJ, Sutton R, Meltzer SJ, Field JK. Allelotype analysis of oesophageal adenocarcinoma: loss of heterozygosity occurs at multiple sites. Br J Cancer. 1998 Oct;78(7):950-7. PMID: 9764589

- Hatta Y, Yamada Y, Tomonaga M, Said JW, Miyosi I, Koeffler HP. Allelotype analysis of adult T-cell leukemia. Blood. 1998 Sep 15;92(6):2113-7. PMID: 9731069

- Arai T, Akiyama Y, Yamamura A, Hosoi T, Shibata T, Saitoh K, Okabe S, Yuasa Y. Allelotype analysis of early colorectal cancers with lymph node metastasis. Int J Cancer. 1998 Aug 21;79(4):418-23. PMID: 9699536

- Chambon-Pautas C, Cave H, Gerard B, Guidal-Giroux C, Duval M, Vilmer E, Grandchamp B. High-resolution allelotype analysis of childhood B-lineage acute lymphoblastic leukemia. Leukemia. 1998 Jul;12(7):1107-13. PMID: 9665197

- Piao Z, Park C, Park JH, Kim H. Allelotype analysis of hepatocellular carcinoma. Int J Cancer. 1998 Jan 5;75(1):29-33. PMID: 9426686

- Gleeson CM, Sloan JM, McGuigan JA, Ritchie AJ, Weber JL, Russell SE. Allelotype analysis of adenocarcinoma of the gastric cardia. Br J Cancer. 1997;76(11):1455-65. PMID: 9400942

- Kawanishi M, Kohno T, Otsuka T, Adachi J, Sone S, Noguchi M, Hirohashi S, Yokota J. Allelotype and replication error phenotype of small cell lung carcinoma. Carcinogenesis. 1997 Nov;18(11):2057-62.
PMID: 9395202

- Baccichet A, Qualman SK, Sinnett D. Allelic loss in childhood acute lymphoblastic leukemia. Leuk Res. 1997 Sep;21(9):817-23. PMID: 9393596

- Visser M, Sijmons C, Bras J, Arceci RJ, Godfried M, Valentijn LJ, Voute PA, Baas F. Allelotype of pediatric rhabdomyosarcoma. Oncogene. 1997 Sep;15(11):1309-14. PMID: 9315099

- Mori N, Morosetti R, Lee S, Spira S, Ben-Yehuda D, Schiller G, Landolfi R, Mizoguchi H, Koeffler HP. Allelotype analysis in the evolution of chronic myelocytic leukemia. Blood. 1997 Sep 1;90(5):2010-4. PMID: 9292536

- Boige V, Laurent-Puig P, Fouchet P, Flejou JF, Monges G, Bedossa P, Bioulac-Sage P, Capron F, Schmitz A, Olschwang S, Thomas G. Concerted nonsyntenic allelic losses in hyperploid hepatocellular carcinoma as determined by a high-resolution allelotype. Cancer Res. 1997 May 15;57(10):1986-90. PMID: 9157995

- Tung WS, Shevlin DW, Kaleem Z, Tribune DJ, Wells SA Jr, Goodfellow PJ. Allelotype of follicular thyroid carcinomas reveals genetic instability consistent with frequent nondisjunctional chromosomal loss. Genes Chromosomes Cancer. 1997 May;19(1):43-51. PMID: 9135994

- Thorstensen L, Qvist H, Nesland JM, Giercksky KE, Lothe RA. Allelotype profiles of local recurrences and distant metastases from colorectal-cancer patients. Int J Cancer. 1996 Dec 20;69(6):452-6. PMID: 8980246

- Califano JA, Johns MM 3rd, Westra WH, Lango MN, Eisele D, Saji M, Zeiger MA, Udelsman R, Koch WM, Sidransky D. An allelotype of papillary thyroid cancer. Int J Cancer. 1996 Dec 20;69(6):442-4. PMID: 8980243