Sunday 4 February 2007
CGHAnalyzer is a software suite, designed specifically for array-based comparative genomic hybridization data display, abstraction and analysis.
CGHAnalyzer can be used to simultaneously load copy number data from multiple platforms, query and describe large, heterogeneous datasets and export results.
CGHAnalyzer employs a host of algorithms for microarray analysis that include hierarchical clustering and class differentiation.
CGHAnalyzer, the accompanying manual, documentation and sample data are available for download at http://acgh.afcri.upenn.edu.
This is a Java-based application built in the framework of the TIGR MeV that can run on Microsoft Windows, Macintosh OSX and a variety of Unix-based platforms. It requires the installation of the free Java Runtime Environment 1.4.1 (or more recent) (http://www.java.sun.com).