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text mining in biomedicine

Tuesday 21 November 2006

litterature mining, literature mining


- OMIM text-mining
- PubMed text-mining

Free tools

- Arrowsmith, A Compendium of Free, Public Biomedical Text Mining Tools Available on the Web


- Building a glaucoma interaction network using a text mining approach.
Soliman M, Nasraoui O, Cooper NG.
BioData Min. 2016 May 5;9:17. doi : 10.1186/s13040-016-0096-2. eCollection 2016
PMID: 27152122 / Free


- Text mining of cancer-related information: Review of current status and future directions. Spasić I, Livsey J, Keane JA, Nenadić G. Int J Med Inform. 2014 Sep;83(9):605-623. doi : 10.1016/j.ijmedinf.2014.06.009 PMID: 25008281 [Free]


- van Driel MA, Bruggeman J, Vriend G, Brunner HG, Leunissen JA. A text-mining analysis of the human phenome. Eur J Hum Genet. 2006 May;14(5):535-42. PMID: 16493445


- Jensen LJ, Saric J, Bork P. Litterature mining for the biologist: from information retrieval to biological discovery. Nat Rev Genet. 2006 Feb;7(2):119-29. PMID: 16418747

Systems biology

- Roberts PM. Mining literature for systems biology. Brief Bioinform. 2006 Dec;7(4):399-406. PMID: 17032698


- Tiffin N, Kelso JF, Powell AR, Pan H, Bajic VB, Hide WA. Integration of text-mining and data-mining using ontologies successfully selects disease gene candidates. Nucleic Acids Res. 2005 Mar 14;33(5):1544-52. PMID: 15767279