gene expression profiling in cancer
See also
unsupervised hierarchical clustering
multidimensional scaling
permutation testing
comparison of significantly expressed genes within a pair
References
Nevins JR, Potti A. Mining gene expression profiles: expression signatures as cancer phenotypes. Nat Rev Genet. 2007 Jul 3; PMID: 17607306
Sotiriou C, Piccart MJ. Taking gene-expression profiling to the clinic: when will molecular signatures become relevant to patient care? Nat Rev Cancer. 2007 Jul;7(7):545-53. PMID: 17585334
Pal NR, Aguan K, Sharma A, Amari S. Discovering biomarkers from gene expression data for predicting cancer subgroups using neural networks and relational fuzzy clustering. BMC Bioinformatics. 2007 Jan 6;8:5. PMID: 17207284
Quackenbush J. Microarray analysis and tumor classification. N Engl J Med. 2006 Jun 8;354(23):2463-72. PMID: 16760446
Mischel PS, Cloughesy TF, Nelson SF. DNA-microarray analysis of brain cancer: molecular classification for therapy. Nat Rev Neurosci. 2004 Oct;5(10):782-92. PMID: 15378038
Tumor Analysis Best Practices Working Group. Expression profiling—best practices for data generation and interpretation in clinical trials. Nat Rev Genet. 2004 Mar;5(3):229-37. PMID: 14970825
Yang XJ, Sugimura J, Tretiakova MS, Furge K, Zagaja G, Sokoloff M, Pins M, Bergan R, Grignon DJ, Stadler WM, Vogelzang NJ, Teh BT. Gene expression profiling of renal medullary carcinoma. Cancer. 2004 Mar 1;100(5):976-85. PMID: 14983493
Bertucci F, Salas S, Eysteries S, Nasser V, Finetti P, Ginestier C, Charafe-Jauffret E, Loriod B, Bachelart L, Montfort J, Victorero G, Viret F, Ollendorff V, Fert V, Giovaninni M, Delpero JR, Nguyen C, Viens P, Monges G, Birnbaum D, Houlgatte R. Gene expression profiling of colon cancer by DNA microarrays and correlation with histoclinical parameters. Oncogene. 2004 Feb 19;23(7):1377-91. PMID: 14973550
Lapointe J, Li C, Higgins JP, van de Rijn M, Bair E, Montgomery K, Ferrari M, Egevad L, Rayford W, Bergerheim U, Ekman P, DeMarzo AM, Tibshirani R, Botstein D, Brown PO, Brooks JD, Pollack JR. Gene expression profiling identifies clinically relevant subtypes of prostate cancer. Proc Natl Acad Sci U S A. 2004 Jan 20;101(3):811-6. PMID: 14711987
Bloom G, Yang IV, Boulware D, Kwong KY, Coppola D, Eschrich S, Quackenbush J, Yeatman TJ. Multi-platform, multi-site, microarray-based human tumor classification. Am J Pathol. 2004 Jan;164(1):9-16. PMID: 14695313
Hiyama E, Hiyama K, Yamaoka H, Sueda T, Reynolds CP, Yokoyama T. Expression profiling of favorable and unfavorable neuroblastomas. Pediatr Surg Int. 2003 Dec 23 PMID: 14691637
Kim B, Bang S, Lee S, Kim S, Jung Y, Lee C, Choi K, Lee SG, Lee K, Lee Y, Kim SS, Yeom YI, Kim YS, Yoo HS, Song K, Lee I. Expression profiling and subtype-specific expression of stomach cancer. Cancer Res. 2003 Dec 1;63(23):8248-55. PMID: 14678982
Martinez N, Camacho FI, Algara P, Rodriguez A, Dopazo A, Ruiz-Ballesteros E, Martin P, Martinez-Climent JA, Garcia-Conde J, Menarguez J, Solano F, Mollejo M, Piris MA. The molecular signature of mantle cell lymphoma reveals multiple signals favoring cell survival. Cancer Res. 2003 Dec 1;63(23):8226-32. PMID: 14678979
Liang P, Pardee AB. Analysing differential gene expression in cancer. Nat Rev Cancer. 2003 Nov;3(11):869-76. PMID: 14668817
Lee Y, Miller HL, Jensen P, Hernan R, Connelly M, Wetmore C, Zindy F, Roussel MF, Curran T, Gilbertson RJ, McKinnon PJ. A molecular fingerprint for medulloblastoma. Cancer Res. 2003 Sep 1;63(17):5428-37. PMID: 14500378
Hampton GM, Frierson HF. Classifying human cancer by analysis of gene expression. Trends Mol Med. 2003 Jan;9(1):5-10. PMID: 12524204
Chung CH, Bernard PS, Perou CM. Molecular portraits and the family tree of cancer. Nat Genet. 2002 Dec;32 Suppl:533-40. PMID: 12454650
Ramsay M. Gene expression profiling to predict lymphoma outcome. Trends Mol Med. 2002 Apr;8(4):159. PMID: 11927271
Astolfi A, De Giovanni C, Landuzzi L, Nicoletti G, Ricci C, Croci S, Scopece L, Nanni P, Lollini PL. Identification of new genes related to the myogenic differentiation arrest of human rhabdomyosarcoma cells. Gene. 2001 Aug 22;274(1-2):139-49. PMID: 11675006
Takano T, Hasegawa Y, Matsuzuka F, Miyauchi A, Yoshida H, Higashiyama T, Kuma K, Amino N. Gene expression profiles in thyroid carcinomas. Br J Cancer. 2000 Dec;83(11):1495-502. PMID: 11076659
Liotta L, Petricoin E. Molecular profiling of human cancer. Nat Rev Genet. 2000 Oct ;1(1):48-56. PMID : 11262874
Wooster R. Cancer classification with DNA microarrays is less more ? Trends Genet. 2000 Aug ;16(8):327-9. PMID : 10904257
